Chat-RefinedTPPProtein-level analysis
Compare treatment and Vehicle with protein quantification input. Explore QC and changes in ΔRm at the PQE level.
Research software · local analysis
Chat-RefinedTPP
A local workspace for analyzing TMT-based Refined-TPP data, from experimental design to quality control and traceable results.
Developed and maintained by Haoru Song (宋昊儒).
A task-specific agent harness for TMT-based Refined-TPP research.
01 / Demonstration
See the local workspace
The walkthrough will show how an experimental design becomes an analysis report in the local app.
The promotional video will be available here once published.
Chat-RefinedTPP walkthrough
Video pending publication02 / Scientific workflows
Choose your unit of analysis
Both workflows preserve the run settings and link results to their evidence. The Agent helps with setup and interpretation; the pipeline performs the calculations.
N-glycosite analysis
Use protein, enriched peptide and sequence inputs to examine Site Groups and their matched protein reference evidence.
03 / Distribution
Download & install
Chat-RefinedTPP runs locally. Public downloads will be listed here when released.
v0.4.2-fix3
The original demonstration build. Windows setup requires a user-installed Python 3.12.x.
v0.5.0
Improved Agent context, report history and run comparison. Requires a user-installed Python 3.12 or later. Stable release pending acceptance.
Subscriber affiliations
Institutions voluntarily shared for public aggregate reporting.
- University A45%
- University B30%
- Research Institute C15%
- Other institutions10%
Fictional institutions and percentages. Live figures will use confirmed subscribers who opt in to share their affiliation. Small groups will be combined; names and email addresses will not be displayed.
Subscriber trend
Confirmed, active subscribers at the end of each month.
Illustrative counts. The published trend will use monthly totals and can fall when readers unsubscribe.
04 / Documentation
Use it. Understand it.
Start with the workflow, then look under the hood when you need to extend it.
Quick Start
Installation, model configuration and the first run.
Developer Guide
Follow a request from Agent instructions and tools to the fixed analysis pipeline.
05 / Research
Research & citation
Record the software version used in your analysis. Cite the original Refined-TPP method separately from the software platform.
Refined-TPP method
Read paper ↗Original method reference in the Journal of the American Chemical Society.
Software citation
Chat-RefinedTPP · Haoru Song · include the exact version used.
06 / Project updates
News
Read updates here without signing up.
v0.5.0 validation
Testing the updated local package, Agent scope rules and report workflow before the first stable release.
Original Demo baseline
v0.4.2-fix3 remains the demonstration baseline. This baseline is distinct from the v0.5.0 validation build.